Cytoscape Expression Data and Network - Search Videos

Cytoscape tutorial: How to add gene expression data to an interaction network

Cytoscape tutorial: How to add gene expression data to an interaction network

Describes how to: 1. Load an interaction network on cytoscape from a file (uses bioGRID) 2. Filter nodes by species and create a sub-network from filtered nodes 3. Add your gene expression data to the network in the form of a table 4. Change the color of the nodes to represent the changes in gene expression 5. Search for a specific node in the ...

40.6K viewsJul 20, 2019

Cytoscape Tutorial

Cytoscape Tutorial- Beginners Guide in Jupyter

Cytoscape Tutorial- Beginners Guide in Jupyter

21.4K viewsMay 14, 2019

Cytoscape Tutorial | Installation & Introduction | Part 1

Cytoscape Tutorial | Installation & Introduction | Part 1

YouTubeSanket Bapat

40.3K viewsMay 3, 2021

Start with Cytoscape for Free Network/Graph Visualizations (Start-to-Finish Simple Application)

Start with Cytoscape for Free Network/Graph Visualizations (Start-to-Finish Simple Application)

YouTubeSaniya Khullar

3.1K viewsOct 15, 2022

Top videos

Cytoscape 3 Quickstart Tutorial - Basic Expression Analysis

Cytoscape 3 Quickstart Tutorial - Basic Expression Analysis

YouTubeTrey Saddler

115.5K viewsAug 3, 2018

Network Visualization and Analysis with Cytoscape

Network Visualization and Analysis with Cytoscape

YouTubeBioinformatics DotCa

49.1K viewsJun 27, 2018

Cytoscape Tutorial | Features & Network Generation | Part2

Cytoscape Tutorial | Features & Network Generation | Part2

YouTubeSanket Bapat

28.9K viewsMay 12, 2021

Cytoscape Network Analysis

Network Analysis using Cytoscape

Network Analysis using Cytoscape

YouTubeLawrence Uy

2.3K viewsMay 30, 2022

Cytoscape Tutorial | Network Style & Analysis | Part3

Cytoscape Tutorial | Network Style & Analysis | Part3

YouTubeSanket Bapat

19.9K viewsMay 13, 2021

network visualization by cytoscape tutorial based on group layout

network visualization by cytoscape tutorial based on group layout

YouTubeLucy zhang

9K viewsJul 29, 2020

Jump to key moments of Cytoscape Expression Data and Network

From 03:06Adding Differentially Expressed Gene Information

Cytoscape tutorial: How to add gene expression data to an interaction netw…

From 01:55Importing Expression Data

Cytoscape 3 Quickstart Tutorial - Basic Expression Analysis

YouTubeTrey Saddler

From 15:00Network Visualization and Analysis with Cytoscape

Network Visualization and Analysis with Cytoscape

YouTubeBioinformatics DotCa

From 05:55Data Collection and Clustering

The Cytoscape Ecosystem: Tools and Data for Network Biology

YouTubeThe NDEx Project

From 00:09Network Generation

Cytoscape Tutorial | Features & Network Generation | Part2

YouTubeSanket Bapat

From 01:19Creating a New Network

Filtering Networks in Cytoscape

YouTubeCytoscape

From 11:00Disease Data and Network Analysis

Network Visualization and Analysis with Cytoscape

YouTubeBioinformatics DotCa

From 0:00Introduction to Networks

How to make networks with Cytoscape

YouTubeJuliana Afonso

From 0:00Introduction to Network Layout

Cytoscape Tutorial | Network Style & Analysis | Part3

YouTubeSanket Bapat

From 00:08Loading the Network into Cytoscape

Building a network from a gene list using the GeneMANIA module in Cyto…

YouTubeGenomeSpace

Cytoscape 3 Quickstart Tutorial - Basic Expression Analysis

Cytoscape 3 Quickstart Tutorial - Basic Expression Analysis

115.5K viewsAug 3, 2018

YouTubeTrey Saddler

Network Visualization and Analysis with Cytoscape

Network Visualization and Analysis with Cytoscape

49.1K viewsJun 27, 2018

YouTubeBioinformatics DotCa

Cytoscape Tutorial | Features & Network Generation | Part2

Cytoscape Tutorial | Features & Network Generation | Part2

28.9K viewsMay 12, 2021

YouTubeSanket Bapat

How to make networks with Cytoscape

How to make networks with Cytoscape

3.9K viewsFeb 19, 2021

YouTubeJuliana Afonso

Cytoscape Tutorial | Network Style & Analysis | Part3

Cytoscape Tutorial | Network Style & Analysis | Part3

19.9K viewsMay 13, 2021

YouTubeSanket Bapat

Visualization of Biological Network using Cytoscape

Visualization of Biological Network using Cytoscape

16.8K viewsJul 28, 2021

YouTubeAshok Kumar T

Cytoscape PPI Network layouts | High quality network Figures for Publication | Bioinformatics

Cytoscape PPI Network layouts | High quality network Figures for P…

42.4K viewsJun 10, 2020

YouTubeBioinformatics With BB

Network Import into Cytoscape

34.3K viewsJul 12, 2019

YouTubeCytoscape

Cytoscape Tutorial | Network and String Database | Part4

14.9K viewsMay 23, 2021

YouTubeSanket Bapat

Cytoscape stringApp: Brief introduction to the app that bring…

10.4K viewsSep 13, 2021

YouTubeLars Juhl Jensen

Cytoscape hub genes| STRING Database| Gene Interaction Netwo…

10.1K viewsSep 5, 2024

YouTubeFuture Omics

Cytoscape: How to build protein-protein interaction networks

5.3K viewsDec 12, 2021

YouTubeTiny Cactus

The Cytoscape platform: Brief introduction to the graphical user …

YouTubeLars Juhl Jensen

Cytoscape Tutorial | Installation & Introduction | Part 1

40.3K viewsMay 3, 2021

YouTubeSanket Bapat

Cytoscape | Gene Interaction Networks Figures for Publication…

11.2K viewsFeb 17, 2023

YouTubeDr. Muhammad Naveed

Filtering Networks in Cytoscape

12.2K viewsDec 2, 2018

YouTubeCytoscape

Cytoscape network

1.7K viewsNov 2, 2020

YouTubeFuture Omics

Beginner's Guide to Gene Expression Analysis - Part-2 | GoA…

3.6K views9 months ago

YouTubeBioinformatics With BB

STRING Database | Hub Genes Network Construction by Cytosca…

26K viewsJul 29, 2022

YouTubeMuhammad Salman Akbar Saani

Identifier Mapping in Cytoscape

3.7K viewsJan 24, 2019

YouTubeCytoscape

Basic stringApp tutorial: Cytoscape app store, STRING protein query, …

YouTubeLars Juhl Jensen

MetScape Pathway Network Tutorial

2.8K viewsJul 27, 2021

YouTubeUniversity of Michigan Computational Medicine …

Beginner's Guide to Gene Expression Analysis: Bioinformati…

7.3K views9 months ago

YouTubeBioinformatics With BB

Protein Protein Interactions String Cytoscape

36.2K viewsMar 30, 2019

YouTubeBioinformatics With BB

Network Visualization and Analysis with Cytoscape

15.4K viewsMay 18, 2018

YouTubeBioinformatics DotCa

Cytoscape and Enrichment Map

13.7K viewsOct 13, 2017

YouTubeBioinformatics DotCa

Cytoscape Layout Tools

12.2K viewsFeb 5, 2019

YouTubeCytoscape

stringApp enrichment analysis: Brief introduction to the GSEA fun…

7.4K viewsSep 20, 2021

YouTubeLars Juhl Jensen

network visualization by cytoscape tutorial based on group layout

9K viewsJul 29, 2020

YouTubeLucy zhang

See more videos